Bacterial Metabolism

Supplementary files for RECOMB 2013 paper:

Analysis of Metabolic Evolution in Bacteria Using Whole-Genome Metabolic Models

Ali A. Faruqi, William A. Bryant and John W. Pinney
Lecture Notes in Computer Science Volume 7821, 2013, pp 45-57
http://link.springer.com/chapter/10.1007/978-3-642-37195-0_5

Supplementary Material Legends

Supplementary Figure 1

Supplementary Figure 2

Supplementary Figure 3

Supplementary Figure 4

Supplementary Table 1

Supplementary Table 2

 

The active modules methodology used in this work is now published:

AMBIENT: Active Modules for Bipartite Networks – using high-throughput transcriptomic data to dissect metabolic response
William A. Bryant, Michael J. E. Sternberg and John W. Pinney
BMC Systems Biology 2013, 7:26
http://www.biomedcentral.com/1752-0509/7/26/abstract